1. Software of BOCTOPUS2 on the github:

https://bitbucket.org/sikander_hayat/boctopus2_newdataset

2. The whole package of BOCTOPUS2 in one zip file.

boctopus2_newset_hhblits.zip (134 B)

README for the BOCTOPUS2 package

Supplementary information of the paper

• boctopus2 dataset (42 proteins): boctopus2_crossvalidation_dataset.xlsx


• Sequences and their annotation used for training/testing boctopus2: boctopus2_dataset_sequenceannotation.txt


• Sequences of the discriminating dataset:
  • Positive_dataset.fasta
  • Negative dataset.fasta


• Cross-validated boctopus2 performance (protein wise results for topology prediction): boctopus2_filter0.3_proteinwise_crossvalidated_results.xlsx


• Cross-validated boctopus2 performance at different thresholds (protein wise results for topology prediction): proteinwise_prediction_results_at_different_filter.xlsx


• boctopus2_predictedtopologies.zip


• predictedtopologies_othermethods.zip


• predictedtopologies_comparison.zip